Basic Information | |
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Taxon OID | 3300012941 Open in IMG/M |
Scaffold ID | Ga0162652_100011137 Open in IMG/M |
Source Dataset Name | Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Shell Corporation |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1119 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Ranch near Red Deer, Alberta, Canada | |||||||
Coordinates | Lat. (o) | 52.172047 | Long. (o) | -113.738964 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020506 | Metagenome | 223 | Y |
F024778 | Metagenome / Metatranscriptome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0162652_1000111371 | F024778 | GGAGG | VNRPDSRNAAGGWQATPGQPIPRAARQPAANGLLLVMLLLVWFSPLSIVAWLLGQVAILLQRRWHWWRFTLASLITIGVVLAVTGPAQALRRHVFVPQHFWQYVALHFGYGPPGTRVTVGQFLWDLVITQVWLAVPVGLLAASLSVWNAERAAGGAEWSPFVRRRQRIDQRTRDRRTARLLAKPRDHKLTAPALGVALDGDLRSWRQGRYVV |
Ga0162652_1000111372 | F020506 | N/A | RLVGLDVRAWSFVIPQLAHVHAVGVVRLALEPSIPAGGRWLSERELRREAGKSHVPDAAIQLPDDQDLAAGAGLYGEDVDPLPKRIAVEVELTRKGAARLREAWTRPRHGRWPRTSYYAPPEVAGYLTGQLARIRPRHPIQVHPLPDVPGTSYLRPGGAS* |
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