Scaffold Ga0162650_100000032

Overview

Basic Information

• Taxon OID: 3300012939
• Scaffold ID: Ga0162650_100000032
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14080
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964
  • Depth (m): .15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F017066	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0162650_10000003214	F017066	AGCAGG	MILPLAHHSLVVALPVFAPALVVIAVLVVHHLRGRRHWDEEPGA*
Ga0162650_10000003215	F002483	N/A	VPAVPRLRRRRSAPPPARPRPRSYYLVAGIQLDDEMERLRALPAFAAGPLAERSPELKVRRAGRRPNRLGFAVPSQYRLSVTAYPGIRPGDVLETLLHELVHLHVGRAAEAHAWHGPTFKRVLGRAMREAYGVTIPTPRATLHGPYAEAIETLRQAREA*