NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0162651_100038602

Scaffold Ga0162651_100038602


Overview

Basic Information
Taxon OID3300012938 Open in IMG/M
Scaffold IDGa0162651_100038602 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameRanch near Red Deer, Alberta, Canada
CoordinatesLat. (o)52.172047Long. (o)-113.738964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014924Metagenome259Y
F085833Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0162651_1000386021F085833N/AVSSYLLLAFAIFLVAFDFQNLRSWSGGQTIKPDREKSQDFTIVVPVFGHPRYFEAERLLQYRHKVLVAMEISSPSMAAFADELEARGWTVERLVVEDPNPAALVAAALPAVDTTYTFR
Ga0162651_1000386022F014924AGGAGGMQSAATRGFTVVTVVTLIFAPVWKGKHWIDVLTGRKTETTIVKCQPNDPCPAHKHITQKIVLPHP*

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