Scaffold Ga0162653_100059256

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0162653_100059256

Scaffold Ga0162653_100059256

Overview

Basic Information
Taxon OID	3300012937 Open in IMG/M
Scaffold ID	Ga0162653_100059256 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	604
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Ranch near Red Deer, Alberta, Canada
Coordinates	Lat. (^o)	52.172047	Long. (^o)	-113.738964	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0162653_1000592561	F001079	AGAAG	MVTELVPSAQPYVSWSSSSMAVIPAADWPAVFASMQALKGHVQEYPGCQKLEAFVEPAGPDYRIHCYTIWDTPEQLEAFLERGYTFERMLADVAGIEAERPRMME
Ga0162653_1000592562	F000805	N/A	GHKETMYRADTWHVHWIDLAWLWGFAIALVVVILLWIWQYRSTRQKAGPYPVDSFGGYTTELAGPATLFFLLLTVGLTGWAVVLIVGHLVWGQKF*

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