Scaffold Ga0162653_100007963

Overview

Basic Information

• Taxon OID: 3300012937
• Scaffold ID: Ga0162653_100007963
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1213
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002111	Metagenome / Metatranscriptome	592	Y
F012223	Metagenome / Metatranscriptome	282	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0162653_1000079631	F021376	N/A	VYLKHLSSLEFLTYLAFVAVVLAAVWRLVPGKALPVRTQPYSDDELGSHDQKLAKYFVAGGGFLVLGSLHMLAKNL
Ga0162653_1000079633	F002111	GAGG	MAIAPPFVAYSSLTEVLVAASDWEDLYGSLQALKGHVQEYPGCQRFDVFVRVEGDGDVRIHCYTTWDTPGQLEAFLERGYTFERLLADFGTRDAELSLVMEKIF*
Ga0162653_1000079635	F012223	N/A	ALVAFLWAWKAGHFHNLEEAARVPLQIDEEDYYTPDWALEEEEWTDVDADR*