Scaffold Ga0162653_100002877

Overview

Basic Information

• Taxon OID: 3300012937
• Scaffold ID: Ga0162653_100002877
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Thermobifida → Thermobifida fusca → Thermobifida fusca YX (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007942	Metagenome / Metatranscriptome	342	Y
F072059	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0162653_1000028771	F072059	GAG	MTAPSWQEDDPNNLSLIQSNAAQLITELRAAAAERILPTREELCRWHARLYAGCDVPIVGYVGHFRGEPTVKE
Ga0162653_1000028772	F007942	GAG	MASRAVFPLRWRNERLRALTAEVAARLGISQNELIEQAIEHEVVARGAMLSEDLRAAADRLAELTQEQYERIQARSVEGFVAGEGLPEPVQARLTPRAAAVDSVAVDRPATARDVTAIYRSARTELA*