Scaffold Ga0163109_10395388

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10395388
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1012
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F028358	Metagenome / Metatranscriptome	192	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_103953881	F092017	AGGAG	MGMLLMLKEGRNLSIESIPDQPLEPSFPIVNPDIKANDGWFGLGAFGQAIFAAELVEEGAA*
Ga0163109_103953882	F003693	AGG	MISKQALIDITADASNSLGVSTDGMLLCGIQFPAAMTGTSVTFDFALDNSTWADVVETDGSAVSYSVSAGDVVRVDPSGWGFASNGYIRVTSNGTEAADRAIVLHFRHS*
Ga0163109_103953883	F028358	N/A	QLLDLNNELVKGTVDIAGTILPRDRNVAGVDIDTVITPFGSIGLMVIDPDIMPSGSAFILDLAYIQPVFTNIPGYGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVA*