Scaffold Ga0163109_10347767

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10347767
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F024645	Metagenome / Metatranscriptome	205	Y
F092187	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_103477671	F092187	N/A	DYADEWWCMDCEHGPMDEKDDKCDRCGAKNSQYHGEEEITGWEDEDIESEVEEIW*
Ga0163109_103477672	F000302	GGAGG	MVATMSADTKLRIADLERQKIELENQLETLGYANNLVRMHKIEEEIFEIEDTIKKLLP*
Ga0163109_103477673	F024645	N/A	MNKGVEMQKNKRQFYITELNMGDDGLESTTDHSGPFTLAKARKIMERMLKGTDPWINPYAMSIRGPRHTNCRGYNTEFYSHREDR*