Scaffold Ga0163109_10245110

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10245110
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1313
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019327	Metagenome / Metatranscriptome	230	Y
F033761	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_102451101	F019327	N/A	VKLKHYTLKPYQLESKHLSQIHKIIEKVVSEKKDEYWDNYTDYSVFDQTMITIGLIDDDVKCFSSIYTREFYGDYVYRLFNRFLVDDDIREEGGSKSYKGEHRFFDMIHQQIEFVKTLEPKFYFMSRQRKNTRWLKWYFDKFNKQYDANLVVSNEQYRVCNGSNYDCCQTLIYPKEMKIP
Ga0163109_102451102	F033761	GGAG	MAQINNHEFYGLDTAYVEKHKELFNFFDNQNLDVEINDDFAELKSILTSKDKDDYPYDFDPAFESYLDKATGFVLYLRYNNEVVATYAAKKLSLLNFIEQMKLKYPGNYETIDEFPGQEAYSSCQWVSKEHRGKKWGRVLDHLKKNICFDLMKCDTNFAIHKSDLRDYHVNHLAYSNNKKLAVIPNGDVGGAGEVIDKEYWIAYSSNTEWADKQSEVKTLYT*