NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163109_10091115

Scaffold Ga0163109_10091115


Overview

Basic Information
Taxon OID3300012936 Open in IMG/M
Scaffold IDGa0163109_10091115 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2232
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)9.5025Long. (o)-92.3286Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097379Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0163109_100911152F097379AGCAGGMSISTTYQIISKNETYSLNWPTELLFDETAGNEEPIVGILTHTSEIDLFDEEGNVTGISTITDEDQVRSLPEDFEPESAEVFLYSSHLSLVTGVNTTTEYWAIHPNYTYDKIATAFYVPDENSVDRYDGDLEQLAAMSEEQWCNLQFEDDASLQTKIGTNYTFMILEQNDSLRDKYLSTSTSPNNTFLVDQLGLKPLTTEEHNLLQSMSDHTFEINVGISTDPIDDPNDHSIPSTP*

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