Scaffold Ga0163109_10071091

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10071091
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2549
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_100710912	F002374	N/A	MNQVLLYASIILASVSFFLCCYACARVGKLINSVKGLDWDTIAYLTGDIGTIKKSIQTLNNRINGLNSPKINDELLHYAMKQQSNVHDINQKNVGG*
Ga0163109_100710913	F013311	AGGAGG	LAFLGDFGKFFGLGSSKEVLGDVGSAIGGFVGGPGGAVIGQKIGSTVGQATSSLGSSDISPLSTADQSLEQSAVPVSKTGNIPQETSTMTGTTGMTMQAGFGSLVPSLIGGAKSIFPQIGKFISTPTGAIATGVGTSVGVNLLGGTDNGKMKPVLTQSRRNKARVRQLVNFMGIEGSAQFLSQASGQNVTAGDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMARTRRTPTRRTTTTLIKN*
Ga0163109_100710914	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAYLNNDLLTTGSQRNRVLVRFTNDTGATRTIRCGIFIGG*