Scaffold Ga0163109_10060760

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10060760
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2771
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_100607604	F006793	N/A	MTNTRSNNEQMEERVNYAADQLAKGKRAMDISKKLSSKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARDQENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVAKKRKKKYGDLDSLDNSDMPF*
Ga0163109_100607606	F016820	N/A	MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKAALATLFPNHGDKAEIIRCEIISTEEARITYEKTKPKDIFEKCEDGFCPMPTPQTQEVS*
Ga0163109_100607607	F012584	N/A	MKLKPYLPENTFRLSEDSLPQEHHTDRFGKIMVFRKDVGWTVIPLTDAVQFLAMKHTHWTFTPDTPYD*
Ga0163109_100607608	F037769	GAGG	MSYIQTQTDKEDEKLLRKLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLINATALTPRDYENDDDFHEALLHRLHIAEHFISINKYIDEHLDFAKSHIPPQAP*