Scaffold Ga0163109_10050883

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10050883
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3041
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_100508832	F004606	GAG	MKTHRIFNKGQNVYCLLASHTNPNVLLPVKGKILDSKWDPVNPLYQIRIVKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTANALEKRLNEKDRERFYVVVESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISARPFFKGPLSIDSVKEFDARYKKGWSDKFEKGNLNIDKYLNSLG*
Ga0163109_100508833	F008190	AGGA	MEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSSLMRQLQNAIGRNISTTIFYVLGTLNKETVGGIQSYVESLSDKPITYKIYHSPDITVNGTAELFDDIIEFE*