NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163109_10032524

Scaffold Ga0163109_10032524


Overview

Basic Information
Taxon OID3300012936 Open in IMG/M
Scaffold IDGa0163109_10032524 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3846
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)9.5025Long. (o)-92.3286Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007401Metagenome352Y
F033764Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0163109_100325246F033764GGAGMHVDKYVVNNFGTKWTKGKDKKNQLLDSLDGNDGIQLKKLVPLLEQWFETVTGGWSDKKVELIINVKEDER*
Ga0163109_100325249F007401N/AMKHEEILKQRDLLDTILASRTNQYERIKHMQIMDSIYFKKKLPENVVLFPLQRIKRYVHNTTNKPNKNSKKVQ*

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