Scaffold Ga0163109_10016407

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10016407
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5488
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057691	Metagenome	136	N
F062260	Metagenome	131	N
F089162	Metagenome	109	N
F096079	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_1001640711	F096079	N/A	MYESVKFIKLTRVEGYGTFIINLHHIVKMKTRYPGTGKGTIIWIAALKSHSGYDMIEVEEDLDVIMQYLSVKNIS*
Ga0163109_1001640715	F089162	N/A	MQTTNQIEKALEKKINAELMEVVEQFTNACKALGSKYGAHVFQDLKHKDSSITCLRPDEFKNIIFNSLKDKFGNAMLETKSKELIDKLELI*
Ga0163109_100164074	F057691	AGGAG	MTAAIRKAQDRLREAKRQLLNAQNDFKVNRGDTFRFRVQAMLMVVNRIEKEVGNRIAWEKWGTGPWPEDGKKV*
Ga0163109_100164075	F062260	N/A	MTNLLKHRELVEEFFDKAQELSHLAETIHILTDEMDFAAMDVLINMLLSAMVEGDLEALTRVMADFAVRNSKKGKQDAIGDLIDATQNERGVN*