Scaffold Ga0163109_10008237

Overview

Basic Information

• Taxon OID: 3300012936
• Scaffold ID: Ga0163109_10008237
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7791
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 9.5025
  • Long. (^o): -92.3286
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F018289	Metagenome	236	Y
F029123	Metagenome	189	Y
F061779	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163109_1000823710	F061779	GAGG	MMPDEMEAEKNRKLLLSQADTIEILKRNVRDLQGQLNLQQVKNKKLIEQNAEAMVMIGHLQQEIDAKEEV*
Ga0163109_1000823713	F004493	GAGG	MQNTVTKNNALDFDDEQWSQLINANGLLIMWFIEWNKGDREDANILEFFARKYQQSAGCEPYPMSGKVSLDGKYVSRDDDDLEPYFLINTPDGVGYIYPYAFVALPKKKGGHTIVRMD*
Ga0163109_1000823714	F018289	AGGAGG	MTQFNRSQLNLLRKQLQETIDGANLSDITIEVGNCSYTGGEATFKVKCVLKGAKTREQIDLEYYAELHDIDTTAIAKLQGEDMSIIGYKSRARKKPWVLQRLRDGAEFVCADHTAKAFFKKRQEIRDEPIHVEKARV*
Ga0163109_100082377	F029123	AGGAG	MSYEVWFGQDGKWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRKREHASV*