Scaffold Ga0157211_1013180

Overview

Basic Information

• Taxon OID: 3300012933
• Scaffold ID: Ga0157211_1013180
• Source Dataset Name: Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 847
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia ambifaria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.33257
  • Long. (^o): -78.9405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058090	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157211_10131801	F058090	N/A	ASDAGARSTVKKTMNWAKEQLAEGTTPQRMYEVRKDLRSAAQGLLDKEGSQYSLAKGQLEQVIKAVDNTIEAAAPGYQDYLKKYAQSSKGIERLEAAQDFRGKVLSTTPDPSGVTDYMISQPSFTRAIRNAEKDTNLSKTQLAVLKKVSEDLDSGVLNRAGKTPGSDTFKNLSTANVIGAFIGKQMFGEVPAAVNKVAAPLNWLYNGTDDQIRELLVDAMLDPKLASRLMTKASVVTVEPLSKELQRKAIAAGYGASFGLTER*