 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012933 Open in IMG/M |
| Scaffold ID | Ga0157211_1000683 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5365 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Kawartha Lakes, Ontario | |||||||
| Coordinates | Lat. (o) | 44.33257 | Long. (o) | -78.9405 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F005087 | Metagenome / Metatranscriptome | 412 | Y |
| F039529 | Metagenome / Metatranscriptome | 163 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157211_10006833 | F005087 | AGGA | MALFIQSANSLVSRVAQWVGAIPSSISINASSYVSATGVITTSADPSSALIVGDFIGNSAIGPFTPVIAISSTTITVSDPDGVWSGATLPTPILKLPTQSSIEVLQCVQLCELKMRTAELPSLRSNPYGDDGDHVYTDDNGMADIPRDMNWPILFFQDTPNSQIAPDSPAASLGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQKYVFTPNPGKGVKIRAYYQKIFPFLYSATGDVLNPIVQNNAALASFPEGYLYGTLEAYYDKNKNTAEAQKWAARFEDAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR* |
| Ga0157211_10006834 | F000857 | AGGAG | MELNLNNEEAKVNEDYYTQGILGGGIEGALIKNNKMFNEVKSGTWSQTFKTANIDYKVGALDGERYVQYEQKNVESIRQGCKERREFYKEHGTDNPFFAGTFHAMELPKCFAHEISSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPTGKIPLPYNPSIPTK* |
| Ga0157211_10006836 | F039529 | N/A | KFREGPKVRNAGGSLAAASRPVAKAKTSAESKTEQLQKKAASGDKKATQDLLATILATNKRRPR* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |