Scaffold Ga0157211_1000065

Overview

Basic Information

• Taxon OID: 3300012933
• Scaffold ID: Ga0157211_1000065
• Source Dataset Name: Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26260
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.33257
  • Long. (^o): -78.9405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F008183	Metagenome / Metatranscriptome	337	Y
F050321	Metagenome / Metatranscriptome	145	Y
F058801	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157211_100006512	F008183	AGG	MLGADAMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMTLVSGASAVVGYFLSYFKH*
Ga0157211_100006513	F003265	N/A	MRWLFFILLLLLSKATANEFCIVSDFYGLSWIGNPSERHQRLSEWLTTNGKNCSSEQLVGIWNNLALWAGTADSAELRQKILYYYAMAVEREKK*
Ga0157211_100006514	F050321	GGA	MITFDKWYGLVQPTHTATQLAFDKAVEKVQEEYRYAIASNKLELKTLEMEVELYDKRARQNTIELGAFENRRRFQIFV*
Ga0157211_100006519	F058801	AGGAG	VKNSNFQTPRNFADCTWVQGYGRKEPLWERVAGYVLAFGIGVGLAVTLVAWWSS*