Scaffold Ga0157211_1000032

Overview

Basic Information

• Taxon OID: 3300012933
• Scaffold ID: Ga0157211_1000032
• Source Dataset Name: Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39027
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (79.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.33257
  • Long. (^o): -78.9405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y
F022651	Metagenome / Metatranscriptome	213	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157211_100003249	F073561	GGA	MALFSQNTLTQVSGFDNPIIAGELVWEQKTYWNLTLRSGSTPVNLTGVDIDAQIVRRTVTNLTDTRNGLTFDVGNYSPTPTPVSLTIANRNDAAGSFTLLIDDSSWDLISSDPELDINAQDPVCFTGRIKMGFPASSPTPAEDNIIFLMFLVRSDGVVVV*
Ga0157211_100003250	F000324	AGG	MIKEARTAHDVTYDGVTVRVFHANKGQGIAKHQHAYSHLTMVHAGSLAARKEGKELVMTKYTQPVNLVGNEWHELEALEDGTVFVNVFAEGKY*
Ga0157211_100003256	F002085	GGAG	MNVIAPVDGTTNIRHAEFVRVTTASDVYLFSTAPFAITVSAVDSQPFDGLSQLVSIGDATRDIKSTANETTVTLIGIDTALLGWVLGQNIKGSKIEMWHGFFNTDNELLTSGGTGGLYKFFTGNVTSFHIGETWDEDHKTYLGVITVSASSIQLILQNRTAGRFTNDNSWQFFNNGDTSMARVPYLESISYPFGKGASPNS*
Ga0157211_100003257	F000934	GAGG	MGLTDILAISESVGINDQRFIGQSISRNQRITTSEVLTVVPFIFELRPMNYLLYTQNRALLSSLRIPDKSLEQFLNFSSTGWVNYIQYQGDMTSAQIGSCQWQTSSANKVLVLGSLPSISATKYIVKAGDFCQVGRYSYIATTDVLRGSGTTVNIPVHRSLITPVTVATAAVIGEFGNTTSLGGISYTGVTFPVILREYPTYTLIPITNDSFIQWSGIFKAMESVL*
Ga0157211_100003262	F022651	N/A	MTVTVKDNSDLLNFLVTQAESRKDWFGFVQQRITAVALAHDIARHHADKMTPEQVAAYALELNEVIYHKIIKTTR*
Ga0157211_100003265	F002997	N/A	MAIARFENIAINNLTFSESSFGEGATTQTKWFDTRARVSDVANSLKIADKYRLYQELTQFTLNYTPNMKQIVDGQDQYSITWRGQDWRITDVREANDRMTVMFLCYRNDPVTSV*