Scaffold Ga0157211_1000014

Overview

Basic Information

• Taxon OID: 3300012933
• Scaffold ID: Ga0157211_1000014
• Source Dataset Name: Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64617
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.33257
  • Long. (^o): -78.9405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000843	Metagenome / Metatranscriptome	864	Y
F008686	Metagenome / Metatranscriptome	329	Y
F039507	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157211_100001427	F008686	GGA	MTYDELYANIQAYTENTFPDTYLADGSSVDTETQIXXXXXX
Ga0157211_100001435	F000324	N/A	MNLVQVTHQVISDGAQLNVYHANKGDGLPRHEHIYSHVTMCHSGSIKVSNQNRSIVMTKDTQPVNLVANEWHEIEAMEDGTVFVNLFAEGKY*
Ga0157211_100001443	F000843	N/A	MSLYHIQPRELPVVWGEVAPMLQKAIDIDPNAVTIEQVEYSVRTGAAHLLVWEEPGEGLTGAVTVEFIDYPRARVAHVNLMGGKGIVKKHVFEEAQNWMRMHGATKAQCWCQDNLVPMYEKMGMTNTHKVMRIEL*
Ga0157211_10000148	F039507	AGGAG	LDNSRVLAYIAKEIDKLRGDQNSFLSGGGAKTFDEYRHVCGVIRGLTHAETIVKDLVQRMEQSDE*