Scaffold Ga0157211_1000008

Overview

Basic Information

• Taxon OID: 3300012933
• Scaffold ID: Ga0157211_1000008
• Source Dataset Name: Freshwater microbial communities from Tributary to Mariposa, Ontario, Canada - S7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89988
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 77 (65.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.33257
  • Long. (^o): -78.9405

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F004727	Metagenome / Metatranscriptome	426	Y
F015601	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157211_1000008117	F015601	N/A	MAYLENYMAGYTKQFLIDAFMSRYLQALAIEKLENLEKMATDLYDRVGRDKFRDYAGLSADAIRVYKNKC*
Ga0157211_10000086	F004727	GGAG	MKVTITYHDNESFTVEEVVKQAVNNYGRLAQVEIMPESTLAYDHIYFGLQQLVTHEQLSMLFDKDSGYQQEIKKLREQVLYKVTEIIDQVIIDNESKVS*
Ga0157211_100000887	F004133	GGAG	MKYTNESTKQLIADYQAGVTVQALAQQFQVPERSIIAKLSSLGVYQKKQYLNKRGEVPTKKSEHIERIAELLQCNLELLESLEKVNKQVLLMIEQNLESKSDPKLN*