NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153915_10383109

Scaffold Ga0153915_10383109


Overview

Basic Information
Taxon OID3300012931 Open in IMG/M
Scaffold IDGa0153915_10383109 Open in IMG/M
Source Dataset NameFreshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie, Old Woman Creek
CoordinatesLat. (o)41.3778Long. (o)-82.5108Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F018044Metagenome / Metatranscriptome237Y
F031613Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0153915_103831091F018044N/AIPALGPYPSRGEYEHCFTLEGPSGEFIQLTPTVAEHTARAIEWSRHLPRFRKRFSIDEREQREDRAYDAWAYDLLDSATPAFHKQPFVTVA*
Ga0153915_103831092F000739GGTGGMKRFELWLKGIVAAAISGAAGGVLTGFAAVGIDPQHFNLQSGTGATLRIGAAAALINALIGVAAYLQKSPLPSE*
Ga0153915_103831093F000696N/ALLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVILSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDASSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF*
Ga0153915_103831094F031613GAGGMPITITLLPSNEDGSGSNWFYAIGTLTFSGNYPTGGDTLDFTTVADKLPSTQII
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Institute for Fundamental Biomedical Research
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