Scaffold Ga0137407_10009936

Overview

Basic Information

• Taxon OID: 3300012930
• Scaffold ID: Ga0137407_10009936
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6697
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F006655	Metagenome	367	Y
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137407_1000993610	F006655	AGGAGG	MMRDARRTALLVVFSLLTSAATAHAEGAWVLWEHSYEVWVDSKKEHHRRDGYWKKVTSTVAKSDCDDRRVREARAEYYELTGKGVGATLAGSEVGFDQSNTRYKRGYHSFECWPDTVDPRGLKGK*
Ga0137407_1000993611	F104063	N/A	MSRVAVAAGIVGLLLFVEPPLDGLAGYLLFQEGHQIIGTIVLSVNAVIAAGVLFSFLPEWCHPPGLTLAAAIAHYNVNVWLGLVALGYAVEVRAWPPALVLLVGVVLVAIGGRGVVAWLSSGRSRL*
Ga0137407_1000993613	F000517	N/A	EKQLTDVKVLAGSWRGWVTGEQGQERATMIISADGSYKASTPRGLTSEGQFYLQDGKLRYRSSRTTGTASLSEDKGKTTLTVLPEDSTYGRADYERVK*