Scaffold Ga0137407_10007434

Overview

Basic Information

• Taxon OID: 3300012930
• Scaffold ID: Ga0137407_10007434
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7561
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021438	Metagenome / Metatranscriptome	219	Y
F046231	Metagenome / Metatranscriptome	151	Y
F055478	Metagenome / Metatranscriptome	138	Y
F064480	Metagenome / Metatranscriptome	128	Y
F105847	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137407_100074341	F021438	AGGAGG	MNPVKSPTQLRLTQDLLERADAMIAMMAADPEVRALGMPTRTAVLRLAIARGLRDLECQYQPPAPTHESAPRPPTIPHDATPGSREGTLSHVYAGRNGEDQAPESHRDW*
Ga0137407_1000743410	F105847	N/A	MTIVQLERLEKGDFPMATYHTIRGQILARVPGIDPADIPGLLQMLVYTVRGPERWNMAQIRHTLAGLETLWVEEIADLQEVIAAQQLDGLARGLTKPAVEAELMASLRQEFMRGEIPRLSR*
Ga0137407_100074342	F046231	AGGA	MATGRSQPSIVIDVQVLVTHAASVATMEREMGNPPRLIRTPDVCYLFHARDEERLPGLVDRWESYGIAAQVVQIPPTGGQSTRYSHPNTIILPRTSRP*
Ga0137407_100074343	F064480	AGGAG	MSSTTDHVHEGRDQTASPSTDAQVADGPLDAPQETEASFEEIER*
Ga0137407_100074344	F055478	GGAGG	MNAKIKQNRTPEGLGRWGIRGMDDFTVEELAQLQHKLDGWIRQRAHDPERTRRRPWVMRPKTAHPA*