Scaffold Ga0137404_10004922

Overview

Basic Information

• Taxon OID: 3300012929
• Scaffold ID: Ga0137404_10004922
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8960
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000120	Metagenome / Metatranscriptome	2081	Y
F001218	Metagenome / Metatranscriptome	745	Y
F002158	Metagenome / Metatranscriptome	589	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137404_1000492210	F002158	N/A	MKNLITLAGIASIGVVLALISACETTGTGGSAASQQGQAAATGGQPGQQLIQGQSLYPTLETAGPNNVEVQQFGGFGPMGTAALGDW*
Ga0137404_1000492213	F001218	N/A	VNGALFSSLLAAFVIGSAFAESATAGTATFVSPCECQGQKSGTRWPAKTDPSPVPLDKSTIQSVTPSQICEWKGPAPNEPLTPETDTRIAAEQKWYNLTGRVDSVKVEADGDITLVLKDAEGTKVGSVGAEIPVGSIWCELRQTVFGWTTQSFPFSFKESQKLEIREPHIITVTGKAFFDVQHASPDHSNRRTKSKKYAVWEVHPVKALHIDQ*
Ga0137404_1000492215	F000120	AGGAG	MKRYSLTIHILSLACACLISAGCATQPGAATAPPPNSGHLIVTRVANFGTDLSLVLSVDGKDVGSFTEGRNYDGYLAAGQHVLIARVDPYQAGKRPGRKTLTIKAGQTYSYTAAWSGQKLVLVRNP*