Scaffold Ga0163110_11388278

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_11388278
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 568
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F002490	Metagenome / Metatranscriptome	554	Y
F017493	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_113882781	F002490	GGAGG	MELKEVKKEIKDYVRDHYKYYGFYPYDVQVGEVLYSYDEYMHILSRTV
Ga0163110_113882782	F017493	GAGG	MALCDECSCYDDNWVDGEDITDEELENDPLYEPHRYYYWHGDIQEDYQMPAGYECLCERCFGDLLGAGKIITTDDAIWNPDEMGWSIPYVEETHGT*
Ga0163110_113882783	F001419	N/A	LGGNLLNYEEILKCYEGETDIHASTSFEFGLMNDLYYQLFYSYPEVD*