Scaffold Ga0163110_10440588

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10440588
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Thaumasvirus → Thaumasvirus stim4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F013094	Metagenome / Metatranscriptome	274	Y
F041244	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_104405881	F013094	GGAG	MISAFFTGVIVAIPTSLVAMKLLNSSLFIDNQELRHINEKISIVINQIDEYREERLAEK
Ga0163110_104405882	F009691	AGGAG	MKSELNSKEYVTFARRFVKDLVMDMEIDELRRIVTDHIHEEIQEGENQFGQRGAFEEMIGWSEDIFLSVAEDFELEFEGVQ*
Ga0163110_104405885	F041244	N/A	LGMHFWIDEDAVFMSAPSYATGGGCDMDNAIAVEDWESFTELTPDDLSHLFGYVFKMCILHRDYVRVGYYSKVFGGTDND*