Scaffold Ga0163110_10064756

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10064756
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F058518	Metagenome	135	Y
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100647564	F058518	AGGAG	MQYKDIIIGEDDLECDETDTIHKAIKNHILDIGIAKRETLTGFTWRLDVRMRTDDAS*
Ga0163110_100647565	F028349	GAGG	MQVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEIGDVGYFKPRLGTDEWIYDWVYVKETTDEDLQRVLDK*
Ga0163110_100647566	F020815	GAGG	MRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTGKIDLAEIPPLDAAKQDPETVARKPHKYDFWDNIRDVAENCSLTDFNVALAVFMDRVHDIAEKQKETQQ*
Ga0163110_100647567	F087896	AGGAG	MNYKTAQGAIISDDGYNKVVKQVNLGYGWEATLYNNDRLVLTQDATGDTLSIPPESTKTLRDIITSITEEK*