Scaffold Ga0163110_10064740

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10064740
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F032243	Metagenome	180	Y
F034754	Metagenome	174	Y
F066694	Metagenome	126	Y
F092880	Metagenome	107	Y
F095400	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_1006474011	F066694	AGG	VKADLGIRAGDLVRHNSYKDLLGIVVEVNLNYAGTPVAVAWTGRNPYGFGKNSIHHPDRLEV
Ga0163110_100647402	F095400	GGTGG	MTRYITERDKIYLKLKRIASSCSLRAGEDLHPINDDLIPWLKTNEDIDEYLNLLDILTLMRR*
Ga0163110_100647405	F034754	GGAGG	MKVGDLVDINQQRGTGSYKVTIPRGLGVVVRLEEMEDLHYPNIGSFNLGPIVHVLLNTGETEGFAPQSLEVVCESR*
Ga0163110_100647406	F092880	GGAGG	VKAGDLVKYNSRLLLVLGPNPDDYGYASGWWRCQEVGTNRVRIYSPTQLTVIKTEAQFYL
Ga0163110_100647407	F030729	AGGAG	MKVTKKNIEAILQKDERMKWVTLWYDRSAKQWIFTGGDSVMWDSSGTGIFRLDMLSVEEWVDYAYQLAGRERYVQ*
Ga0163110_100647408	F032243	GGAGG	MSSNFEMYGAEEGWEYPQVGDLVEIASKSSLKTEMGVVVEPNEYIKNDHLWAQVLLDNGKMKVYPKRELKVIQRGEE*