Scaffold Ga0163110_10062489

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10062489
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2383
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001416	Metagenome / Metatranscriptome	699	Y
F002192	Metagenome / Metatranscriptome	585	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100624891	F001416	AGGAG	MPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGTASADTTMDFTVNNAEFAKNA
Ga0163110_100624893	F002192	N/A	MLYSSFLCAILALFIGLYACGRVAKVLNATKDLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKVAEQELLMQLMQNQGQHKNGKMLGG*
Ga0163110_100624895	F000754	N/A	EYVDPGTRIVVASAVDTAGTASADTTMDFTVNNAEFAKNASVSALVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG*