Scaffold Ga0163110_10042847

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10042847
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2813
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F017285	Metagenome	241	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100428473	F054844	AGAAGG	MKVLKTGTLVSWRGSVGLVMGACKKRWAKDDDVWVKWTDELKPKIESSRFLEVLNASR*
Ga0163110_100428475	F008590	GGAGG	MKVGDLVTYWHQRTRWRKGGLAEVHLGTGPQSVHIGLIIETGKFTGNRDVKVLWTGSPEPLTECSQHLSLVDNSLTQP*
Ga0163110_100428478	F017285	AGGAG	MSWSGTVTCSYCYKQGHNKRKCPDLTEAIERKYIGHTLNAKQSREAGKINDAEWYESRAELNRQEYMKRTKIDLATGKKVTNKAAKAARMKKVICGYCGTKGHTRRTCPAVKVDKQVFIEETRRMRIAALESARETGIGVGSMIPIRSTGYDLSGEWRRDILTLRYVQSVLWDDCHANRPILIVKHVDARKLGAPNQSPYTSRDQISKLVQANDTALRYAAAEGDDLPASSLVPTLDPPKGWLQPTEQSLDKAIKQVFPTKGNKHAIQRAWDYAYPSGTIKEIIKDLGLTEHYDHVDWT*