Scaffold Ga0163110_10035706

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10035706
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3047
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100357061	F057769	AGGAG	MIEVGSIVTNVGFIQGRNNSNHGVVVDLLADGKIARVFWASTQKAGFC
Ga0163110_100357064	F008590	GGAGG	MQVGDLVTYWYQRPRWRKGLSVHVGLVVETGKYTGNRDVKVLWKGEPEPQTECSQHLSPVDDSLTT*
Ga0163110_100357067	F009562	AGGAG	MLAIPLIRTDDESSLTPIERTKIGLDAVITALMMQGTLNDPAVTDTERETFTTLSVATIIPAEA*
Ga0163110_100357068	F014672	GAG	MGKYKPGDLVRIKGGTHQDGIPDHRVGMIVEDGHASERYSGPYTIVFLGTDLTLKFHEMFLEPFTIP*