Basic Information | |
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Taxon OID | 3300012928 Open in IMG/M |
Scaffold ID | Ga0163110_10024157 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3613 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters |
Source Dataset Sampling Location | ||||||||
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Location Name | Costa Rica: the Eastern Pacific | |||||||
Coordinates | Lat. (o) | 2.0416 | Long. (o) | -97.0511 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002747 | Metagenome / Metatranscriptome | 533 | Y |
F003154 | Metagenome / Metatranscriptome | 504 | Y |
F006347 | Metagenome / Metatranscriptome | 375 | Y |
F076487 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163110_100241573 | F003154 | GGA | MMNLVGGVYIDERGYRHYRVQDKTYDIRFHPMTLEWGCSCPAYKFGRGKQCKHIKEIQEGKK* |
Ga0163110_100241575 | F002747 | AGGAG | MARDAKRFWVNACIEIYVPDQGYGEKATKNEELDAQWFANEIASQIPKAINKNFRFSERPYSVNDVMVGKIEK* |
Ga0163110_100241576 | F006347 | GGTGG | MIDRITELLNELEQELNDGYNTLPDYQANDEGKTYVNGAQATLYELQKQITELKQGLEQGKNFSLLGEESNNG* |
Ga0163110_100241577 | F076487 | N/A | LSFIILIFYKELKEKEKKIMVLYGETLEINENTENTNQAVYDLYEMKRETLAFNESGCKQGYEDLLDDTDFFTPEDFTDTYNVKGFTDEQVIAMCENGGLL* |
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