Scaffold Ga0163110_10018839

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10018839
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4023
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009762	Metagenome / Metatranscriptome	313	Y
F055856	Metagenome / Metatranscriptome	138	Y
F067686	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100188393	F009762	AGGA	MTRHIQKKWHSKFFIETDYKVPVDFWDTYFNGKWEDSNQLYSEYVNDATGGKAMNKFYVQEIHNYDRKLLRLIKNIWNTFGIRPREFRCNFFRVLEGGELPIHVDNKSKCSFVIPITDNTGELYFDDGTDNASILYDSMVVLNTKKPHGVRSPSKERIVFHMGVHDVGFENLS*
Ga0163110_100188395	F067686	AGGA	MPGDITHYELPDFLPQSTKTELLDIGMNLKDEDWTIHNSTRTGKPSVLHYYDLKRKFYGRNCYLLMIRPNAVQDWHTDGGKRNTALIYPLSENYAPCKFEVGETTSPMFLNTQARHAVFNNEYKRINLNISFTENLQDCMNFFKEIDKYEFDPS*
Ga0163110_100188397	F055856	GAG	MRYKTDRPFSQEELRQMDLIHDPNTSLFIDQNDESYVVKDFINDAERDVLATFFNDNFDSIGLNINDHVLHITYPMAIKDIDDIVRPKIYEHFGDDVIFYSDVAMEDPMSVGDQFFKSIRPYGLHTDSVTHINGYRPYKDIIIPIELDKIEETHYVTFNQRYRGRATHFMKGRDIGSFANYANVIRHQSYQEYGVQNIDHNEKDMSILEKIMPAHIPM