NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163110_10012842

Scaffold Ga0163110_10012842


Overview

Basic Information
Taxon OID3300012928 Open in IMG/M
Scaffold IDGa0163110_10012842 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4741
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)2.0416Long. (o)-97.0511Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F005266Metagenome / Metatranscriptome406Y
F047915Metagenome / Metatranscriptome149Y
F054087Metagenome / Metatranscriptome140Y
F092188Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0163110_1001284210F000379N/AMNKGVEMQKIDYTNKHAIMVGYIDRSDNVVAVETSWKISPENMAKILLEKYPTKEDAIKAVDSPALVPSFRKDDYWYVDGFGDVIESNLSWNKDEMRKNVGHLFLFMKGTWQYSDNGIDWEPADLALNIKEVA*
Ga0163110_1001284212F054087GGAGGMPKFKLLVDVDSVVDEAEHLEDLFKDGIEAETEEEAERLVQAKVKELMYGGPYYSIVDGEDD*
Ga0163110_100128424F047915AGGAMAKVKAIGMSFLDGMWFASYTVGTVMFVLWAVGFISFNF*
Ga0163110_100128426F005266GGAGGMSVHIRYRFLKEKGDYLKDEKMTRGYTLVETHIEHPFHEVLKEFYKDFKGRAVQIFNIWRTPAGEANYRMEEEERRMWS*
Ga0163110_100128427F092188AGAAGGMQFYPKDQDPRLDERSARLHSRMIKKHLEAQTYNDDVNVARATTYVTWDYGKDKWCEVDHHMFHLLTIGKPGETRQSLEDRLCGDVAKYLRNFDLYKNAQVYVTGIDMEHPEWDYGKEKGDEKYYHTTLHIQECNNTDLAIRNHEHDFYDLGNKNLLEVA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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