Scaffold Ga0163110_10010547

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10010547
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5163
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010129	Metagenome / Metatranscriptome	308	Y
F011890	Metagenome	286	Y
F020448	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100105472	F010129	N/A	MANDCFYKVKVTQNGKTETYHWGYFTWPMCLADMKQLYKDGADAVELEMITQKQFDKLMQPYHG*
Ga0163110_100105475	F011890	N/A	MTMKNKILDNLPTLFVIMIVAFSFIMVFNHAYSETQDRVVLINSGKAGGSFNARTQMYKEGLIAAGYNVQFENIGKISQAVKMFKESNQPTIMVYANNQVYKQDLFHTESNFIIAEYQQPLYVCRTNISKDKTGMLTVAHGKGYDPALLTNLLGSNITLVPYKNSGAMLKGILGGDVDMMVNNQGKSFKYIKSGQGTCEASDVLPMMVATVIGKNIDLQEIRKVIFDITMNLQFIEYHTSRKLVRPTSTWEKELAYTQDLEKGYEVK*
Ga0163110_100105476	F020448	AGGA	MRSNNLDLHVNTISDFHDNLMVYYDLVKQKQADHEGVFAEAPLHLDLPELVLFEEKIEDRTILRDEENGKPRNWGTKREWRDYMISKGYNTHNTKMNYVDHTNIPKDLIDLLNTLPIQYPVFSINIQPPGSVVPAHEDTWRIWYDKHPELAKKYTFEDTAFYIVFLTPQEIGHSFQCGNTNIKWGAGDVIKMPYYTKHATANAGFTNKILVQCLGIKK*