Scaffold Ga0163110_10010042

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10010042
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5270
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003770	Metagenome	469	Y
F008885	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_100100426	F003770	N/A	MFKMFAVICAVTVFECNTMYEDPPRLFDTIEECKAAIIQKEKITRNFLTDEDGYLTVVHLEVGCENVYN*
Ga0163110_100100427	F008885	N/A	ILQMAVVIPKANRIPHDQPQQAFYMVSIDTSGFLDTETNNGGRISPCVAEDFATAPTTLAQSRLVSRGALRYKKMLELLQVRSNVSVRNLLTTYASDAGDNPITKLQFGLVYDNDNFIPTTGTAGDGSTTTTTKVGFIKDKISEALFGTFTERMQVFNPTAGAGLISNEEITAAPVLLVSQDEIMDAITVTEAVDTATMVSGFRPTLASELPTDNADNDTAE*