Scaffold Ga0163110_10001483

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10001483
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11940
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (63.64%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F016820	Metagenome	244	Y
F024809	Metagenome	204	Y
F047122	Metagenome	150	Y
F057382	Metagenome	136	N
F058913	Metagenome	134	Y
F089953	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_1000148316	F024809	GGAGG	LNYSQKVLFDDWIKRCPIDGVFVDEPVSEVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLPSQNRFEGA*
Ga0163110_1000148320	F057382	AGGAGG	MSKNDLTLAELKQLISTITFFQLGARTKELKTIKTKLKNQLKEKQNAQ*
Ga0163110_1000148326	F016820	N/A	MTKKEFSYVVICSSGERVEEIHGVYKDVEGACYGARSALTTLFPKHGDEAKIIRCEIISTEEAKTQFEDSKPKDLFEKADCEDGYCPLPTQQAS*
Ga0163110_1000148327	F006793	N/A	MTNFRSTYEEKEQRINYAADQLAKGERSMVIVKKLAKRYNVSPQTSREYVREARKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVSMLTTIDQIGSWDDAYNNHLFKNFSEAKKKVKHSDLDALDNDLPEGEIPF*
Ga0163110_1000148330	F047122	GAGG	VKCPKCNKKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEQDKQDFGQHSKQKKKEYYRKVLAELIEDLEGRTYLDKEKGEKFRIWEGV*
Ga0163110_100014834	F089953	GGAG	MEDLINEEILENIHDGYEIYKITLDDNVEIVIKYAIRERSCFADQDLKLVRHNDVSFFDTKEDAEQALSEIVQKRFEEQAQ*
Ga0163110_100014838	F058913	AGGAGG	MNLTKEEAKWLDDKWDDFYYYFQVRDMFEKDQKIYQSIGKKLSEVKQ*