Scaffold Ga0163110_10000030

Overview

Basic Information

• Taxon OID: 3300012928
• Scaffold ID: Ga0163110_10000030
• Source Dataset Name: Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73444
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: Costa Rica: the Eastern Pacific
• Coordinates
  • Lat. (^o): 2.0416
  • Long. (^o): -97.0511
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F029710	Metagenome / Metatranscriptome	187	Y
F059455	Metagenome	134	Y
F086827	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163110_1000003017	F059455	GAG	MQVISKTIIGTIEWSEGRTKKELAKQTFWSSSKDFSGLSGLEVKAYTFNNHVGCTAITSQGLSQNKYFQIPVDKIEEFCNSLMEAKKFVESKNNEEV*
Ga0163110_1000003032	F029710	GGAG	MKNKDAKIGEEGWYSWLTIRQDLVGDDLSAPIMWLDDMSEDNLWQEDDMNIDWVEEMDKEGAPIIEDDHLCRDICIEVTCPSKNIDKRRAVGYNIDFDWN*
Ga0163110_1000003034	F007770	N/A	MSGEGLSVSFRRTSRTPMSNSELLEKFQNIVYRSRVMKHMKWYGKAHTLDILEHGDDNRQKFEQEYVAIKDTFQFEISVYESWHEDADLYESHEVEDSFVSLARKFAEDYNLMYFPNGFPAEWIEEEIIDGEKNWNHYNVKPDDKNIDKICDAWYSYGIKKLKANNEKEKKELWHQARDKIKQLMEHKNESRVHCS*
Ga0163110_1000003035	F086827	GGAG	MNTYLELEQKYKEKILKLFFDHAKKVEADHDVKTDGDNTDYWNALKLDDGSFVDYNFHMMSDWDDPDRSWTCEVYPVDPPTEDNKYYSINTNHTLFLAFYYPVTQKSEIEI*