Scaffold Ga0137416_10364630

Overview

Basic Information

• Taxon OID: 3300012927
• Scaffold ID: Ga0137416_10364630
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1215
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018221	Metagenome / Metatranscriptome	236	Y
F018429	Metagenome / Metatranscriptome	235	Y
F035231	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137416_103646301	F018429	GGAGG	LNYKTQPPWEFLLSASRNSLQRYELSRLSHAANLRKEITQLLDSWLEENTAAMLAR
Ga0137416_103646302	F018221	AGG	VVPTQREVLRDVMLAAGKYGAWMTLRELGRLTRYGETSISAQLRHLRKANCGGYVLEKRVRLADVIGAEEHFVVWEYRLTPRRATRLRASTSKTRAARR*
Ga0137416_103646303	F035231	AGGGGG	MGVKAELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKYLWRPDFRPRLGEWV