Scaffold Ga0137416_10044591

Overview

Basic Information

• Taxon OID: 3300012927
• Scaffold ID: Ga0137416_10044591
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3066
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051404	Metagenome / Metatranscriptome	144	Y
F070911	Metagenome	122	Y
F086812	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137416_100445914	F051404	GGGGG	MKDNMEPQEDLADETTYSVEEAKEMGAFVEDALSFKDARESVDDFESEK*
Ga0137416_100445915	F070911	N/A	VTVAKGIEYGVNLLGCFIEGYVGSNQALSEEAEAHFGKMTQAALEFARGSFATCSEEHNWYEHFQLLMRHPVINAGVQIAAWHLYRLPEDLLST*
Ga0137416_100445916	F086812	N/A	MPNSDDQHRLNARQRREIDQIGQKFHFNLAPPPSSLDEITTGPKFVSLTDFIEQFDWEYSDLDIVDRREIKHLAAENFWRYIAKSECRWKSPATFRR*