Scaffold Ga0137416_10005388

Overview

Basic Information

• Taxon OID: 3300012927
• Scaffold ID: Ga0137416_10005388
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7254
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007105	Metagenome	357	Y
F039063	Metagenome	164	N
F039548	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137416_1000538810	F039063	GGAGG	LGDGLSPENIARTLAAIDEFVRSASTLDWEMPSDLLGSRLDGGGARKRCPRCRGHLVLREPRIYDGALHAGGPIVDLNGAPRSRQARLIGIGLRVSYVEALRGLTEDDVAFFDRISELHRLFGVRSLNRFAPTPVSRP*
Ga0137416_100053883	F039548	N/A	MPSPRRVPLPAFLLVLAFAVLLGMLLYYAQFSGTIRWLLGVVALAVLAAIAWGQIQRRTAEPSPLVGPRSPGATRDGELDSFAAAVRRAARGLPYSQVLVASRARSAFLERARLALGLPPETIRDVQRDPGALRRMFGDDALVDFLYLEAGDLEDRLAWVQRARARGGFVREFRDVLTRMEAWR*
Ga0137416_100053887	F007105	GAGG	MRILRRHAAAHDEGTALTAHLRRATERQAEIETLQFLLTMIKKRHTWDRIKCTIATAIPAFWVLMIGLMPYLPTWLHPLVQDVPAIWTIAVSLAIAGFQWRNLLDYQRRVIPLVQEMYERAQAKADRQLLAILSDVLRISKLRGFFRSLFSTSR*