Scaffold Ga0137419_10142403

Overview

Basic Information

• Taxon OID: 3300012925
• Scaffold ID: Ga0137419_10142403
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1721
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005262	Metagenome / Metatranscriptome	406	Y
F005616	Metagenome / Metatranscriptome	395	N
F071477	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137419_101424032	F005262	AGGA	MRCTLPSLLTLITLATPLAGQAAPGHVYWVGFYQALPGKAAAYNKALTDVADPVLDELVRRRLMVSHVQLAQYTGAGENTNLVILEFPNWAALDTYDAKLDEASQAVLHKPWREATAGFAELRRLVRIEIYTPS*
Ga0137419_101424033	F005616	GAG	MIPHGGENLRGEPLDFRIPRTGDRDLAFRGWLLSHAEERGGSPALTRGLDIDIYLTIRLRLVAHLCRWSLREGVGLREEHRVAAHDSAAGLLEWLKQENAGRLDAPSKRAWVRACQAWPGLKSEAVERVD*
Ga0137419_101424034	F071477	GAGG	MPAAFQWARLKADVKCALRKGAWYRILKLTPTDVVLDVKGSPLSLPRGQ