Scaffold Ga0137419_10002622

Overview

Basic Information

• Taxon OID: 3300012925
• Scaffold ID: Ga0137419_10002622
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8305
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137419_100026221	F028763	GGAG	MSQEARSKRRIALGVFAIIMGRISLVGLSSTSYYFGLGIFGGAYGAVMIALG
Ga0137419_100026222	F025249	GGAG	VNSLSLDLTASPAENRDSSTGSDTRAPPPSVFGIIVVGLLTGLVVGLLIGPSFTLQGFFLGFAGGALITAGLYFYTSGRSRPSR*
Ga0137419_100026227	F004426	GAG	VVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPESGSTIEYEEWGNGMDLIGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKARFDRTITLSESLIDKHWDETDQSTWRPLRLTQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGELVKPEELRGTTLLPVSIATEYGKITGEIVIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSAQWRVFEKAMRGFVKNKVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKVMMNPRVTPKINMVPGKTRKEIVLGERKHRKGKKHNREATRSVIHLKDQILAFDVAHGGDRGQAYVETEKNGVRTIYVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA*