NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137359_10085585

Scaffold Ga0137359_10085585


Overview

Basic Information
Taxon OID3300012923 Open in IMG/M
Scaffold IDGa0137359_10085585 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2772
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F006125Metagenome / Metatranscriptome381Y
F013395Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0137359_100855851F006125AGGAGMPITITLLPSNVDGSGSNLLYAIGTLAFSGNYPTGGDTLDFTQVIDKLPSTQIIQAFADSQNGNAGYYVPIAGTALNNWKL
Ga0137359_100855852F000696GGAGMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKTQRALGNAGGGGFIQDDVLLVVPAVTQVDTSLQVSITDATAPPNQLPTDLLVPAKIWERPNGSTQDFVEMVDLSQHGGLPSRAQGLTLSVWEWRADGVYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEALAYATAALAGWARGSPLAEKWDEAASDALEDLVAAAVRREQQSARRRRPFSARSGYTPF
Ga0137359_100855854F000512AGGAMISILRETHDTPEAVARALELAGGINRFREPNYRAVWGWNRLAWIGGKFAERDPATGALLREVVELRQEPKYPAVNRWHIEKWLPPDTYGSPRAWWAQTLEVEGGRSVPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIEWSRRHPRSAGKRALYDREDRKELAYDAWAYDLLDDAVPAFHKQPFVTAV*
Ga0137359_100855855F013395N/AMRRIVIGGMALLLGGAIAARGKTESLLFVFLRVDHKQDVAILRPMIAPDIGVQLDSGPRQLAPGTVLTCEMVAREHDAIVEGQVSKVSEMVLNCGEHKFVVKTLDFAPNRK*
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