Scaffold Ga0137359_10011922

Overview

Basic Information

• Taxon OID: 3300012923
• Scaffold ID: Ga0137359_10011922
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7270
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000628	Metagenome / Metatranscriptome	973	Y
F003496	Metagenome / Metatranscriptome	483	Y
F028474	Metagenome	191	Y
F091747	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137359_1001192213	F028474	AGGAG	MLLVKTPEAKQSSSGKFTQTTTWGSRLALLALIVLLAAGTCLADGKKHKLSKELDAVKGGHNGAT
Ga0137359_100119226	F000628	AGG	VAIRRNVGFHIFNVRLLIGLDKLLRAKRRYQGDLSASINDALLAVNLNTIKLVTLQGKKKQTARETQVVLLRRLIHRIKRIADARGCSINQLVNSGLMAFYSKGRTGELGSPSRPTRRSAKATYDKMSSEERQQLMEAIGSLTGLQQGPKDAFPDGTHYEYDPDLKRTVEIDPSGQLIPVTLVAGKLQRESEKTLAHKTTR*
Ga0137359_100119227	F091747	AGG	MGAGKTTFYDAHLKEAFPTLIPPIPHQREAMLREHRSFAVEDLVVDTELVESAREAGFTTKVVFISTEDPNLNAGRILVRMSHGGQSVPLGTIPESYDEAMKSLPAARRHADDLLVYDNTPNGKGHRLVARFIAGELVKTTRSSPEWLKNVFGRELRSEVEPQEKPSRRR*
Ga0137359_100119228	F003496	AGGAGG	MPATQPSKELRPLCHEHHVEMKLNQRLPSSEGNATQALTYPCAESDCFVHYSMSRGYFVLSQNGNTNELDMVPRVRCSHDGTPMYLAEIDREKRAFRLWRCPQCDARRTNEQGLVGAASQEIHAVNRKNGLES*