Scaffold Ga0137359_10010405

Overview

Basic Information

• Taxon OID: 3300012923
• Scaffold ID: Ga0137359_10010405
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7737
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006901	Metagenome / Metatranscriptome	362	Y
F009437	Metagenome / Metatranscriptome	318	Y
F069245	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137359_100104051	F006901	GAGG	MARLVVGTVFAAALSVSFVAMSCNEATAQERATCSQARSHCGTQGVCQTRYESCMQTGC
Ga0137359_1001040512	F009437	AGGAGG	MSSYASYCQDQVCACARRARLATSPEIVAYCRSLEVRWLRLVAQAQETGGALGHESGQAAILFPDKTATYPVEYGKRAGELIARAVRSLRPTLRQKRRTLVRPQAK*
Ga0137359_100104053	F069245	N/A	MLVLMAFAVLEETALARSYLNCLTKKVTIVDAPKGATWSSSEENFGFWIDEATKIVTLVDGKKLNVRRFDDRWISAVSGDVSYELDRQSGKMALRRQ*