Scaffold Ga0137394_10016872

Overview

Basic Information

• Taxon OID: 3300012922
• Scaffold ID: Ga0137394_10016872
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5804
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010452	Metagenome / Metatranscriptome	303	Y
F017074	Metagenome	243	Y
F027210	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137394_100168726	F017074	AGG	VLEIALSIGGLLLSVLTYFLGVRRGKRYREEDLAAAAEHDADHRIDRVVQRYALLVRTNRTGALHGLLVAGVRNLRSSDEIRLARERAAAQTGNDPLRQYSDSVNLKELIDACVFDDTSVRNDHEILERFGKK*
Ga0137394_100168727	F010452	GAGG	MGGFQEDLMALTFRLDSTTAEGTFIRVLRDGQAFGKILDAAGLYRFYEADHEKLGGRAELQDADLERLKAAIQSRYEGRSR*
Ga0137394_100168728	F027210	GGGGG	MKAIRRGLLIGLIVTMDAACAGTGATPPVGTSPTTLMYGWEHHFRIDWTAAQQSANTRRVSGYVYNQNGEFATSLRVLAQAVDPTGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPGDRR*