Scaffold Ga0137394_10002257

Overview

Basic Information

• Taxon OID: 3300012922
• Scaffold ID: Ga0137394_10002257
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14214
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F036440	Metagenome / Metatranscriptome	170	Y
F046930	Metagenome	150	Y
F051726	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137394_100022572	F036440	GGA	MMSSHNDSFAASGSSPTPDFLCENHGSIFLLRPLNKSAQSWIEENLPADAQWFGNGVVVEHRCIWAILEGIQNDGLAVQA*
Ga0137394_1000225723	F046930	N/A	MEGPMPGLISIISALALLLAGAWLLHDGVSGRDLLQIEIIAGATLLSVGVVCSVLLLRHWIKWRRELGKYREG*
Ga0137394_1000225724	F051726	GGAG	MPPKEHQVHRCQNRDCGCEIVVTKTSVEAKGNPRCFCGAEMKKPYSPPVFRVLDPDDELVSRFEEDRNLTS*
Ga0137394_1000225725	F000232	N/A	ASGHNTMKHPKQSKRAPPTHSSALAVPSYHRILVKHGLIEKTLSIPDAYEVFLKVGADPEVQKLRRKVEHGNRMKHVPALYLATAMALQGMTKQELEALKLRIEEKRV*